PCA (Principle Component Analysis)
Input Data
| id | S1 | S2 | S3 | S4 | S5 | S6 |
|---|---|---|---|---|---|---|
| ENSG00000000419 | 6.06 | 5.25 | 5.15 | 5.36 | 5.22 | 5.75 |
| ENSG00000001036 | 4.47 | 5.39 | 5.28 | 5.82 | 5.75 | 6.96 |
| ENSG00000001084 | 4.47 | 6 | 5.77 | 5.76 | 5.76 | 4.64 |
| ENSG00000001497 | 5.27 | 4.27 | 6.58 | 5.54 | 5.57 | 6.4 |
| … | … | … | … | … | … | … |
Code
Output Data
PCA_table
| Obj | PC1(42.6%) | PC2(21.15%) | PC3(16.35%) | PC4(12.27%) | PC5(7.64%) | PC6(0%) |
|---|---|---|---|---|---|---|
| S1 | -15.6338577257844 | 5.75006132034699 | -1.01763453632618 | 17.1014912267183 | -13.23000735460 | 2.69229083e-14 |
| S2 | -29.6005858048123 | -11.5702192020929 | 8.25943746833397 | -16.4338799233497 | -2.816766375733 | 2.6756374893e-14 |
| S3 | -14.9367513109424 | 5.15156205259901 | 0.945997661298611 | 9.2314371757182 | 17.61462280520 | 2.992051051e-14 |
| S4 | 22.4973090934182 | -27.3748687937876 | -9.53740386738099 | 3.82795587242266 | 0.6085606445957 | 2.7533531010e-14 |
| S5 | 29.0157552840107 | 9.69734370234403 | 21.8878995562688 | -2.38097631886981 | -1.07851898421 | 2.3925306180e-14 |
| S6 | 8.65813046411019 | 18.3461209205905 | -20.5382962821943 | -11.3460280326396 | -1.097890735256 | 2.5757174171e-14 |
Additional Information
| Component | PC1 | PC2 | PC3 | PC4 | PC5 | PC6 |
|---|---|---|---|---|---|---|
| Standard deviation | 23.52329 | 16.57392 | 14.57404 | 12.62385 | 9.95973 | 3.089705e-14 |
| Variance Percent | 42.59777 | 21.14663 | 16.35123 | 12.26801 | 7.636353 | 7.348944e-29 |
| Cumulative percentage of variance | 42.59777 | 63.7444 | 80.09563 | 92.36365 | 100 | 100 |
